rs48871260 SNP Detail

Summary

• ID
  rs48871260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97797339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTCAAC TATTTGGGAG
  GCAGAGGCAG GAGGATCAGA AGTTCAAGGC TAGCCTATCT CAATACAAAA TGAAATGGGA
  CCAGGAGATA ACCCATTGGT AAGCACTTAT ACCCTGTGTG CAAGGTCTGG GTTCTGTCCC
  CAGTACTTAC AAACACACAA CCGATAGGCT GACTAAATCC TCCCTAAGTG GCCATTCCAG
  Y
  AGCCTGCTTC TTATACTCTA CATCTCTCCC CCAAAGAACA GAGATGAGAC AGTTTCCAGC
  AACGCTGACA GCTTCTCCCA CACTGTCGTA TACAGCACCA GGCCACTAGG CAAGCAAAGT
  TTGTCTTTGT GGCTGTGCGC TGTGGATGGA GAAGTTCTTA GGCAGCAGCC ATGATGGACT
  CAACACAAAC AAAGCCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss60427112	NES15930548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs48871260					SNP	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60427112	NES15930548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97797339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	1113 bp distal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	1316 bp upstream
Rr581573	regulatory region 581573	852 bp distal
Tssr34685	transcription start site region 34685	1376 bp upstream
Tssr34686	transcription start site region 34686	1204 bp upstream
Tssr34687	transcription start site region 34687	1178 bp upstream
Tssr34688	transcription start site region 34688	1094 bp upstream