rs48871382 SNP Detail

Summary

• ID
  rs48871382
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106343512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AAATCTCAGG GCATGGCACA
  C
  AATGGCTGCT CAGTCAGTGT TACCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136936764	ENSMUSSNP2831424	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323185284	CHEV_9_106368644	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48871382					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106343512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22268	CpG island 22268	221 bp distal
Gpr62	G protein-coupled receptor 62	375 bp upstream
Rr686360	regulatory region 686360	1180 bp distal
Rr686361	regulatory region 686361	within coordinates
Tssr91318	transcription start site region 91318	1418 bp upstream
Tssr91319	transcription start site region 91319	1391 bp upstream
Tssr91320	transcription start site region 91320	1011 bp upstream
Tssr91321	transcription start site region 91321	323 bp upstream