rs48871419 SNP Detail

Summary

• ID
  rs48871419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29585103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA CAGATGAGAA GTGGCCCCGT
  R
  TCTGCGCGCC GATAGAGAGA AGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61585704	NES17530513	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A		G	A	G	G		G
ss323979708	CHEV_12_30219969	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48871419					SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585704	NES17530513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29585103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	within coordinates
Myt1l	myelin transcription factor 1-like	within coordinates
Tssr113063	transcription start site region 113063	1813 bp downstream
Tssr113064	transcription start site region 113064	1789 bp downstream
Tssr113065	transcription start site region 113065	1740 bp downstream
Tssr113066	transcription start site region 113066	1658 bp downstream
Tssr113067	transcription start site region 113067	1637 bp downstream
Tssr113068	transcription start site region 113068	1612 bp downstream
Tssr113069	transcription start site region 113069	463 bp downstream
Tssr113070	transcription start site region 113070	379 bp downstream
Tssr113071	transcription start site region 113071	191 bp downstream
Tssr113072	transcription start site region 113072	77 bp upstream
Tssr113073	transcription start site region 113073	105 bp upstream