rs48871566 SNP Detail

Summary

• ID
  rs48871566
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119463055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAGACA CCTCAGACTC
  TCTGAACTTC AGTGTTGAAA TGGAATACAA AGCCCTCAGC TTAGTGCATT GTCTGAGGGG
  ATCCCCTGGC CTGAAACATG TTCTCCATAT ACCTTTATCT CCACACCCAT TGTGTGTGTC
  AGGTGGTCAG TGTGGTCACA AATGAGGGAC CCAGAGGGAC TCCAGGGGTG CCAGGGACTA
  K
  ACTGAGAGAA GAATTTGTTT CAGACAGATC CACGTTCAAG ATGTGACGGG GAGTCTCAGC
  TTCTCCTCAC AAAGGCTCCA ACCCGAGCAC ATCACTGACA TGGCCGCTGC CATCCCATGG
  CTGACATTTT TATCAATGAC TAACTGACAC GGTAAAACCA TGTGCAACTT CATCTCACCT
  CTTGGTGACT TTGGGGTAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60832047	NES16023324	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48871566					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60832047	NES16023324	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119463055 () rs orientation: forward

Symbol	Name	Function Class
Gm42016	predicted gene, 42016	962 bp upstream
Gm57254	predicted gene, 57254	within coordinates
Gm73317	predicted gene, 73317	within coordinates
Tssr48449	transcription start site region 48449	1019 bp upstream