rs48871873 SNP Detail

Summary

• ID
  rs48871873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:33275287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGAAGAG GCCTCTGTCC
  AGAAGGAATG TGATAAGCCA GGAGACAGGC TGTCTTGAAA CAGTATGCTG ACCATGAAAA
  TGGAAGACCT ATCCATAGTA AGACTTCAAA AGTTGCTGAA AACAGATGAT GGGGAGGAGG
  AGGTAAAAAA CTTTCATTGT AAGCCTGTGT TTTGAATTCT AAAGCCTCTG TGGACAGAAA
  Y
  GGACATGCCC AATCAGGTTC CACATACACC CATATATTCA GTAGCTAGTT ATTAAGGAGA
  CTGAGTATCA AAACATCTTG AGGGCACGGT CCACGAGCCC CATAAACTCC ATCACATGGA
  AAAACTTGCT GAAAAAGCTT CCCCTGTCAC TAAGAGTGCG GGCAGGTAAC AGAGGGTTTG
  GAAATCTTCA TTTTATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60310194	NES15804367	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48871873					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60310194	NES15804367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:33275287 () rs orientation: forward

Symbol	Name	Function Class
D19Mit81	DNA segment, Chr 19, Massachusetts Institute of Technology 81	690 bp distal
Rnls	renalase, FAD-dependent amine oxidase	within coordinates
Rr546635	regulatory region 546635	1322 bp distal
Rr546636	regulatory region 546636	1572 bp proximal