rs48872714 SNP Detail

Summary

• ID
  rs48872714
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181285070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAATGGTTG TTTTTGTTAT TTGTTCTTTT TTTTTTTCTT
  TATTTCTTTG TTTTAGATAG TCTCATTGTA GTCTCACAGG CCGACCTCAA GCTGACAGAA
  G
  TCCTTCTTTA ATCTCCCAAG TGCAAAGTTT ACAGGCAAGA GCCTCTAAGC CAAAGTAATG
  AAAAATGTAT TTTTACTGAA ATGGTTGTTT CTATGGTTA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148402829	ENSMUSSNP2376894	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48872714					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181285070 () rs orientation: forward

Symbol	Name	Function Class
Prpf6	pre-mRNA splicing factor 6	Intron
Rr573060	regulatory region 573060	1198 bp proximal
Rr573061	regulatory region 573061	1281 bp proximal