rs48874060 SNP Detail

Summary

• ID
  rs48874060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10992621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAATTA TCGAAGGAAG
  AAAGATCAAC CCAGAATATG GGCATCATCA TACCATGTGA CACACACAAA AGAGAGACAG
  ACCAACAAGG TTTCAGCATT CATGGCTCTG TTCCGGGCTG ATGACTCAAT ATAACCAACT
  GCTTGCCAAT CAGGCGATTA CCACCAGAGC CTTTCTTACT GCCAACAATG TATTCTCCAC
  R
  CTGATGAACT GTTGCATCAA AATGTGGGCC AAAACCTTCC TACCTTGAGT TGCTTTGCTG
  GGTATTTGGT TAGGTCAACG GAGATAGTAA TTAATATAAA CACAAAGATT GTACGATAGT
  CTATGTCCTT CTGTATTTCT TTGTGTCACC AGTTTCAATG CACACATGCA TATGCATGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324260899	CHEV_13_10941831	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48874060					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10992621 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	21 bp distal
Rr278201	regulatory region 278201	154 bp distal