rs48874103 SNP Detail

Summary

• ID
  rs48874103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8857519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAAATC ACATTCGTAT
  AGACTATTGG TAACTCAAGT CCAACTGTAG ACTTGAGCAA AATGTTGGAG AGAAAGTTGG
  GTGGTTAAAA GTTATGCTGC TCTTGCAGAT GACCTGAGTT TGGTTCCCAG CACCCACATC
  AGGTAACTCA CAACCATAAT AACTTCAGCT CCAGGGGATC CTCTTCTGGA CTGCACAGAC
  Y
  AACACACATA CATGTCCACA TATCCATATA TACATAACCA CATAGTCACA TAACTAAAAA
  ATAAAAATAT TTTAAAAAAT TGTGTCTAGA GATACGTCCT AATACAAATG ACCAATGTCT
  TGCTAACAAG GGTGTCAAGA CAATTAAAGC AGGAAAGAAA GGATATTGCA ACGCGATGAT
  GCCACAAATC GGATATCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146769137	ENSMUSSNP5816654	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323246149	CHEV_10_8701573	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48874103					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8857519 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	1082 bp proximal
Rr223852	regulatory region 223852	1559 bp proximal