rs48875033 SNP Detail

Summary

• ID
  rs48875033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCCGGTG GAGCTGGAGT
  TCCAGACAAT TGACAGGGGT GTTGGGAGCT GAACTCTGTC CACCACAAGG ATTCTAACAA
  CTGAGCCATC TCTTCAGCTC CTCCCCTTTA ACTTCTAACA CCCACCTGTG TCCAGTCCAG
  ACAGTCACCA GATAGATCCA TTCAGAGTCA AGTTTGGTGA TCTGTGCCTG TGATCCCCAC
  R
  TTTGGGATGT GAAAGTAGAA GAGTTACAAG TTTGAGGGCT AACCTGGGTT ACATAGTGAA
  GCACACTGTC TTGGAAGATC CAGGGCAAGG GAGGAGGCTC AGTGGCATAG CCTTTGTCTA
  GCACGTGGGA AGTCCAGAGG GTTCAGTCCC ACACAAAGCT AAACAAAAAG GCTGCAATGT
  CTCAATGGAC TGTAACAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136397284	ENSMUSSNP4356453	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48875033					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477342 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	542 bp distal
Rr206319	regulatory region 206319	141 bp distal
Tssr2844	transcription start site region 2844	1740 bp downstream
Tssr89174	transcription start site region 89174	1669 bp downstream
Tssr89175	transcription start site region 89175	1718 bp downstream