rs48875551 SNP Detail

Summary

• ID
  rs48875551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80565618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAAGAT TACAAAAACT
  CGCCTGTTCC TTAAATAGAA ATAGCAGATT TATGTGAAGC CACTGATCAA AACCTCCTTG
  AGCATGAGCT CCAGGAACAC CCTGTGTCAA CACGGTGAAA ACACCCTGCG GATGCCTCAG
  GATCAAAGTC CCCTTTCACA GCCACGCTTC CCAGAATGAC CCAGATCCCC TATTCCATGC
  Y
  GTCCTACCTG TTAGGTTATA CAGGTGGAAA TTGAGAGTAA TGTAATCCAC CTCAGCACAC
  AGAACAGAGC CAACTTTCAT TCCTCCAAAG AATACAGCTT GTGTTTTGTT TAAAGGTGAG
  ATTCTAAACC ACTGGTAGAT GGCTGAAATA TAGCTTTTTT TTTTTTTTTT CTCTTTTGAG
  TAAGGGTGGT AGTGAGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136688879	ENSMUSSNP6944019	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323024905	CHEV_9_80577172	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48875551					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80565618 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	1317 bp distal
Rr683773	regulatory region 683773	within coordinates
Tssr86335	transcription start site region 86335	1652 bp downstream