rs48875652 SNP Detail

Summary

• ID
  rs48875652
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115470394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC TAATTGACCA GCAATAATAG
  M
  GGGTCGTACT TTTTTCATTT GATGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60829338	NES16021078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A	C		C	C	C	C		C
ss321654742	CHEV_5_115782344	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48875652					SNP	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829338	NES16021078	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115470394 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	907 bp downstream
Srsf9	serine and arginine-rich splicing factor 9	within coordinates
Tssr48220	transcription start site region 48220	386 bp upstream
Tssr48221	transcription start site region 48221	523 bp upstream
Tssr52783	transcription start site region 52783	1694 bp downstream
Tssr52784	transcription start site region 52784	1733 bp downstream
Tssr52785	transcription start site region 52785	1763 bp downstream
Tssr52786	transcription start site region 52786	1889 bp downstream
Tssr52787	transcription start site region 52787	1934 bp downstream