rs48875884 SNP Detail

Summary

• ID
  rs48875884
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164796059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCTCAAA CCTCCCAAAT GTATTATTTT TCAGCCATCT
  CCTTTATACC CTTCCCTCCA ACCATACCGG TAACCCAGTA ACCTTTAATA TATTCTTCAA
  K
  AGTGGGGAGG GTTAGGAGAG GAGGGCAGAG GTTCTGACTG TGACCCCAAA CGATACGAAG
  GTAGAAGAAA CTCACACGGC CTTGCCTGTG TGTCCAAGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148233750	ENSMUSSNP2694320	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320607225	CHEV_2_164779639	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48875884					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164796059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	478 bp distal
Mmp9	matrix metallopeptidase 9	Intron
Rr569777	regulatory region 569777	1495 bp distal
Rr569778	regulatory region 569778	688 bp distal
Rr569779	regulatory region 569779	1750 bp proximal
Tssr21693	transcription start site region 21693	1705 bp downstream