rs48876297 SNP Detail

Summary

• ID
  rs48876297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127290368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGATAA AGAATGAAGG
  ACACAAAGAA ACGTGTCCCG GAAACTGTGA CACAGTTACA ACACAGTGTG ACTGGAACAT
  ACAACAGCTC ATCATGTAGC TGGATGATCC AGCTATATCT TCTGTTTTGC TGTTTCTAAT
  TTCTTGAGAA TCACTTGCAA ACAAACAGAG GAGATTCTAC TCTGCAGCCA GAGGTTTCAG
  Y
  TCTACCTGAC TTCAGATAAA GGGCAATGAC CAATCTGGGC AACCCATTTC TACATCCTAT
  GCAAATTAAT GCACCAATCA CCAAAGAAGA GTACTGGAAG GTCAAAAAAA CCGAAACCCT
  GCACAGAGGA CATCATGGTA ACTTCCGATG TTACAGCATT ATGTCATTTT GCACAGCTCC
  TAATGAGGTC TTCTCAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135865050	ENSMUSSNP1037139	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320954672	CHEV_3_127199637	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48876297					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127290368 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	1613 bp proximal