rs48876495 SNP Detail

Summary

• ID
  rs48876495
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88186430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTGTGCATTT CTGGGGCTGG AAGTCCCTGG AGAGTTCCTT
  TGGTCACAGT AACGACAGCA TCAATGAACA GATGACAGTT TTTCAGACAA ACATGTGCTC
  C
  GTCCTGGTGA GAGGACCAAG TGAGGGGGCA AGGTTGGGTT TATGACCCTA TTTTTACCTT
  TTACCATGAA AATACCTAAC AGGACAATGC AGGGGCACCT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144898786	ENSMUSSNP4993571	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48876495					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88186430 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	171 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	402 bp upstream
Tssr7959	transcription start site region 7959	424 bp upstream
Tssr7960	transcription start site region 7960	439 bp upstream
Tssr7961	transcription start site region 7961	486 bp upstream
Tssr7962	transcription start site region 7962	640 bp upstream
Tssr7963	transcription start site region 7963	668 bp upstream
Tssr7964	transcription start site region 7964	683 bp upstream
Tssr7965	transcription start site region 7965	719 bp upstream