rs48876647 SNP Detail

Summary

• ID
  rs48876647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72686326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAGGCCAG CCTGGTCTAC
  AAAGTGAGCT CCAGGACAGC CAGGGCTATA CAGAGAAACC CTGTCAAAAA AGACCTCTTA
  GTATCTCCCA TAATGTTTAC TGAAGAGGCT GAAGGCATTC TAGAATATTG CAGAATGCTC
  TGGAGTTGCA ATACTTACTT ATCATAATAG TCCATTCAGC AGCCACAGTA TCCCTGCTGT
  R
  TGCCAATCAG TTTATCCCAT CACCTGCACC TCCGGAGCCC TAAGGACACA GACCGGAGCA
  CTCTGGCTGA GCTGAGCGAG TCAGGAATCC ACGGAGAAAA CAGGAGGGCA GGGAGGGGCT
  CTACGGAATT GCTTTAGGAA TTCCAGCTGA AGCCGGGAAG GAGGCCCACC GGAGTCAGAG
  AGCCGGAGGG AGAGCAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421327	NES16805520	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48876647					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421327	NES16805520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72686326 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	within coordinates
Gm68819	predicted gene, 68819	1371 bp upstream
Rr197250	regulatory region 197250	1126 bp distal
Rr197251	regulatory region 197251	726 bp distal
Rr197252	regulatory region 197252	475 bp proximal