rs48878281 SNP Detail

Summary

• ID
  rs48878281
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125994585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCACGAGGT TGGGTAAGGA TGAAGAGCCC AAGATTGCAG
  CATTTCAGGG CTGTTTATGA TTGAACTCCA AATGCAAAAA TTTCCAAGAC ATTTCGCCTG
  W
  CATATAATGT GTTCTGTGGG AAGGGAGTCA AGTTCTGTGT TTAAAAAATG GCGGTGGTAT
  CTTGGATGTT TAAAAAAAAG GGGGGGGGGG GCGAGAGGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147495610	ENSMUSSNP3652493	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48878281					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125994585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	66 bp distal
Dtwd1	DTW domain containing 1	within coordinates
Fam227b	family with sequence similarity 227, member B	661 bp upstream
Rr367293	regulatory region 367293	579 bp downstream
Rr564315	regulatory region 564315	672 bp distal
Rr564316	regulatory region 564316	514 bp distal
Rr564317	regulatory region 564317	518 bp distal
Rr564318	regulatory region 564318	within coordinates
Tssr19931	transcription start site region 19931	519 bp downstream
Tssr19932	transcription start site region 19932	453 bp downstream
Tssr26028	transcription start site region 26028	704 bp upstream
Tssr26029	transcription start site region 26029	656 bp upstream
Tssr26030	transcription start site region 26030	623 bp upstream