rs48878323 SNP Detail

Summary

• ID
  rs48878323
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:27299050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAATTCA CAGAGACTGT
  GGCAGCATGC ACAGAGCCTA TGCGGACCTG CACCACATGG GGTCCTAGAG CTGAAAGCCT
  TGGGCACATG CCCTCATCCC TATCATAGAT GCTCTCTCCA ATTGATAGGC ACTTGCAAAG
  GAAAACTTAG TTTTCTCTAA GGGAGACTCA TAGGAGAAAC AAACCAGTCC TAAGGCTAGG
  M
  CCCATGCCCA GCAGTAGATG GCCAACACAA AACTATCTCA ATGGTCTTGT CAGAGGTTCT
  TTGTCTCAAA ATGTTAAGTC GGGGCTTTTT TTTTTTTTTT TTTTTTTTTT AAACCTTACA
  GCAGGTCCTC TGTGAATGTA CTATGGCTTC TGGTCTTGAG GTTTTATATG ATTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402164497	MGP_WTSI_19_27396140	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48878323					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402164497	MGP_WTSI_19_27396140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:27299050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10724	CpG island 10724	1355 bp proximal
Gm35268	predicted gene, 35268	within coordinates
Gm50114	predicted gene, 50114	within coordinates
Kcnv2	potassium channel, subfamily V, member 2	938 bp upstream
Rr545853	regulatory region 545853	1978 bp proximal
Tssr5470	transcription start site region 5470	950 bp upstream
Tssr155737	transcription start site region 155737	109 bp upstream
Tssr155738	transcription start site region 155738	868 bp upstream
Tssr155739	transcription start site region 155739	889 bp upstream
Tssr155740	transcription start site region 155740	959 bp upstream