rs48878597 SNP Detail

Summary

• ID
  rs48878597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26751582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGATCAT GCTTGGCCCT
  AGGGTGGGAA CAGGCAGCCA GGTGCTGGGT AAGGTTAGAG CCTGGGGAAC ATTAGCACCC
  TGACAGACTA CTCTTATCAA AAGCAAAGAG TGTGCTCTGG GCCTTAGCCC CACAAGTCAA
  TAATGCTATG GCAGAGGCAC ATGTGAGACC AAGCCAGGCT GGAAGGTTCC AGTGGTGCCA
  Y
  GCAGAACTAG CATGAATCAC AAACAGAACA CAGACAAAGC ATCATTGGCA GGCACAGAAT
  ACTGAAGCTG GCTGGGGCAG CACACACCAG GAACCTAGCA ACTGGGGCAC TGAAGCAGAA
  GCATCATTGA AAGCATGAGG CCATCCTGGG CTACGGAGTA AGAGCCTCTG TCAACAAAAC
  AAAACAAAAC AAAACAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554847	NES16569799	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48878597					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554847	NES16569799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26751582 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Tssr143239	transcription start site region 143239	769 bp downstream
Tssr143240	transcription start site region 143240	271 bp upstream
Tssr143241	transcription start site region 143241	287 bp upstream
Tssr143242	transcription start site region 143242	301 bp upstream
Tssr143243	transcription start site region 143243	326 bp upstream
Tssr143244	transcription start site region 143244	357 bp upstream
Tssr143245	transcription start site region 143245	1517 bp upstream
Tssr146959	transcription start site region 146959	911 bp upstream
Tssr146960	transcription start site region 146960	6 bp downstream
Tssr146961	transcription start site region 146961	29 bp downstream
Tssr146962	transcription start site region 146962	57 bp downstream
Tssr146963	transcription start site region 146963	102 bp downstream