rs48880014 SNP Detail

Summary

• ID
  rs48880014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82924193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTCCAG AGAAAGGTGC
  CCGAAGTGGG GACTCTCTTC AGCAGGTACC TGAGAAAAAA TTCGCCTGAG GGAGTTACCA
  GAACTCGGGG TTGACGGGTT GCCCCAGAAA GAGACTCCTG AAGGAACATG AAGGGAAGGT
  CTGAGGGGGG ACACCAACCG GGTGTCTGGA GGCGTACCTT CCAATTGAAA AATAGTTGCC
  Y
  AAGTGAGCGA CTTAGGTTCT AGGCTGGAGC TTTGGAGCAC TAGAGCGTTG CTTTTGTTTG
  CTGGGGAAGG GGTAACCAAG CAGGAAAGCC TGAGGGACTT GCCCTGGGGA AGGCATCTGA
  GGTGGACTCT TGAGGGAGCG GAGCCTGAGG TGACCATATC TGAGGGGCAG TGCCTGAAGG
  AGTTCTCTTG AGTAATCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904332	NES15955967	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48880014					SNP	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904332	NES15955967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82924193 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	within coordinates
Rr632711	regulatory region 632711	1252 bp distal
Tssr57261	transcription start site region 57261	288 bp downstream