rs48880314 SNP Detail

Summary

• ID
  rs48880314
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76574121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAACGC CCTGAGGGCA
  GACGTCCACC ACCATGGCCG AGCACCTGGA GCAGAGTGGG TGTAGCAGAT CTAGTGACTG
  CACTGAGCTA TCTTCCTGAT GGGAGCAAGG CAGATGGTAG ACTACAGGGT GCTCAGTAAG
  CAGTCTGCGA AGCCCTTATG CTACTCCTAG AGTCCAGGGA AAAAACCTTG CCCAGCCCAG
  M
  GCAGCCAGCT CTGTTTTACT GTCTAGGCTG CATAGCCATT TCTGAAAAGG ATGAGTAGGC
  CCCGATATAC CCCCGTGTCC TACTCTTCCC TAGTTAGGTG GGAAGAGTAA GGCAGAGCAC
  CCCCCCCCAC CCCTGTGTTG TTGACTTTCA GTGTTCTGGG GGGAGAGTGT GGGTTCCACA
  CAGGGCTCCC CTGGAGCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63562394	NES17020680	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48880314					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562394	NES17020680	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76574121 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp1r16a	protein phosphatase 1, regulatory subunit 16A			Intron
				Noncoding-Transcript-Variant
Rr504821	regulatory region 504821			751 bp distal
Rr504822	regulatory region 504822			381 bp distal
Tssr131814	transcription start site region 131814			637 bp upstream
Tssr131815	transcription start site region 131815			663 bp upstream
Tssr131816	transcription start site region 131816			1317 bp upstream