rs48880524 SNP Detail

Summary

• ID
  rs48880524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10610492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCAGTTTC CACTCCGGCC
  GCGACAGCTG GGCGTCGGGT GGAAGGCAAG CTGGCGTCCA CACTCAGCGC AGGCGCGTTG
  GGAGGCCTCG CGTGCGCGCC TCCACGGGTG GACGCCTTAC GGGGACGGGG CAGCGCCCCC
  TGTTGGTGGC GGCTTGTCCA CGCGGTCATC TCCGGCCACA CACCCACTTT GGGGCCAGTT
  R
  GATGGCTCAA AAGGTGAACC TGCCTGCGGC CAAATAATAC AACTGAGTTC GACCCCTGTG
  AGCCCCGTGA TGGAAGAAGA AAGAGAACTA ACTCCTGCAG ATTGTCCTCT GACTTAAACA
  TGCCAACCAT TGCATACGCA CCCGCACATA CATAAATGAA AACTGTTTTT TGTTTTTTTA
  CAAGACAGGG TTTCTCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss146607072	ENSMUSSNP3715878	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325524295	CHEV_18_10610490	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48880524					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10610492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	within coordinates
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	140 bp upstream
Rr533778	regulatory region 533778	394 bp distal
Rr533779	regulatory region 533779	716 bp distal
Rr533780	regulatory region 533780	within coordinates
Rr533781	regulatory region 533781	356 bp distal
Rr533782	regulatory region 533782	50 bp distal
Tssr152429	transcription start site region 152429	376 bp upstream
Tssr152430	transcription start site region 152430	348 bp upstream
Tssr152431	transcription start site region 152431	204 bp upstream
Tssr152432	transcription start site region 152432	180 bp upstream
Tssr152433	transcription start site region 152433	129 bp upstream