rs48881615 SNP Detail

Summary

• ID
  rs48881615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119984268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTGACA GGGGCTGAGG
  TAGATCAGGA GTGTCAGCAT GTCCCTCTGT CCCCAGGCGC CTGGCCAAGT CCACCCTCCT
  GCTGATCCCT CTCTTTGGCA TCCACTACAT TGTCTTCGCC TTCTCCCCAG AGGGTGCCAT
  GGAGGTCCAG CTGTTCTTTG AATTGGCCCT GGGCTCCTTC CAGGTACGTT TTGGGAACTG
  Y
  GACTTAAAAG AGGACTCCTC AGGACGAGAG CAATGGCTCA CTCAGTAAAG TGCTGTGTGG
  GCATGGGAAC CTGAGTTTGA TCACTGGATC CCACAGAAAG TCTGTATGGG GTGCATGCCT
  AAAATCCCAG TGATGATGAG GTGGAAGAGG GATCGCTGGA GATCACTAGT GAGCTAGCCT
  AGCCTACCTG GAGACAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60789415	NES16432254	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48881615					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60789415	NES16432254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119984268 () rs orientation: forward

Symbol	Name	Function Class
Rr30107	regulatory region 30107	within coordinates
Rr371936	regulatory region 371936	170 bp downstream
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	1302 bp downstream
Tssr8397	transcription start site region 8397	1279 bp downstream