rs48882076 SNP Detail

Summary

• ID
  rs48882076
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72534061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGGGAGG CAGAGGCAGG
  CAGATTTCTG AGTTCGAGGC CAGCCTGGTC TACAAAGTGA GTGCCAGGAC AGCCAGGGCT
  ACACAGAGAA ACCCTGTCTC GAAAAAACAA AACAAAACAA ACAAACAAAC AAAAAAATAT
  GTATTGTTTG AGTCTGGGGA GGGGGAGGGG AAAAACATGT GACTGCAGAT ACCAGCAGAG
  S
  CTGGAAGAGG GGCACCAGAG TTGGAGTTAT AAGCAGTTGT GAACTGCCTA TTGTGGGTGC
  TCAGAACAGA ACTCAGGTCC TCTTAGAAGA GCAGTGTGTA CTCTTGACCA CTGAGTCACC
  TCTGTAGTAA CCTCAGGACA TAATTTATAA ACAAGATAAA AACGGTAAAA TATATGGTGG
  TCGGTGATGT GGAGGAAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321822106	CHEV_6_72507072	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48882076					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72534061 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	1275 bp downstream
Tssr57143	transcription start site region 57143	1249 bp downstream
Tssr57144	transcription start site region 57144	960 bp downstream
Tssr57145	transcription start site region 57145	920 bp downstream
Tssr57146	transcription start site region 57146	901 bp downstream
Tssr57147	transcription start site region 57147	256 bp upstream
Tssr57148	transcription start site region 57148	1595 bp upstream
Tssr57149	transcription start site region 57149	1688 bp upstream
Tssr61469	transcription start site region 61469	711 bp downstream