rs48882085 SNP Detail

Summary

• ID
  rs48882085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167200069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG AGAGTCGGAA GGCCCTCCAC
  R
  CCTCAGTGGT GGCAGGATCT GGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146037867	ENSMUSSNP3377654	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48882085					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167200069 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1661 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1808 bp distal
Rr422702	regulatory region 422702	1517 bp proximal
Rr422703	regulatory region 422703	1672 bp proximal
Tssr14852	transcription start site region 14852	78 bp upstream
Tssr14853	transcription start site region 14853	1021 bp downstream