rs48882823 SNP Detail

Summary

• ID
  rs48882823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92276192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCCCT TTCCCCCCCC
  CCCCCGCCCC CGCCCCATGC TGTGGTGCAC AGGTGGAGAT CAAAAGACGT CTTTTTCTCC
  TTCTCCGTGT GAGTTCTGGA GCTTGAGCCG GGGACATGAG GTGTGACAAG TGTCTCCCTT
  GCTCAGCCAT CTAGGTGGTT CCCAGGCTAG AATGCTCCCG GTGGTATCTG GGAATATGCC
  R
  TCATTCTAGA ATCTTTCTGG GCGGGAGAGA TGTGTTCTTT GGATTCTGAC TGTTATGTAG
  GGAGGGGATA TTGGAGGGCA ACTCTGGGAT TAGGGGGTTG GGACCCAGAG CTTCAGGCTA
  GGAGACTGTA TTTAAAAGAC ATTGTGGTTT GAGTGTGACG TGCCCGCTAC AGGGTTCATA
  CATGCCTGGC TCATGGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60508513	NES16520088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48882823					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60508513	NES16520088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92276192 () rs orientation: forward

Symbol	Name	Function Class
2410124H12Rik	RIKEN cDNA 2410124H12 gene	within coordinates
Cpgi8471	CpG island 8471	350 bp distal
Rr319727	regulatory region 319727	592 bp distal
Rr325587	regulatory region 325587	192 bp distal