rs48884078 SNP Detail

Summary

• ID
  rs48884078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23862218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA ATTCAGATGA AGTTGCTCTC
  Y
  GCCTTTGAGC CCCCCTTGCC TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145329868	ENSMUSSNP4309940	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		C
ss325326676	CHEV_17_23780211	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48884078					SNP	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23862218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	1304 bp proximal
Gm7773	predicted gene 7773	100 bp downstream
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	1182 bp proximal
Tssr142937	transcription start site region 142937	1031 bp downstream
Tssr146619	transcription start site region 146619	1478 bp upstream
Tssr146620	transcription start site region 146620	1709 bp downstream
Tssr146621	transcription start site region 146621	1735 bp downstream
Tssr146622	transcription start site region 146622	1755 bp downstream
Tssr146623	transcription start site region 146623	1803 bp downstream
Tssr146624	transcription start site region 146624	1822 bp downstream
Tssr146625	transcription start site region 146625	1988 bp downstream