rs48884184 SNP Detail

Summary

• ID
  rs48884184
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118595550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT CACTGCTCTC CCCAGGTGAC
  K
  CCCTGCACCT TCCCAGGTCA CCTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147312064	ENSMUSSNP2973482	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320471667	CHEV_2_118590805	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48884184					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118595550 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	160 bp downstream
Rr563326	regulatory region 563326	1918 bp distal
Rr563327	regulatory region 563327	133 bp distal
Rr563328	regulatory region 563328	373 bp distal
Rr563329	regulatory region 563329	237 bp proximal
Rr563330	regulatory region 563330	1422 bp proximal
Rr563331	regulatory region 563331	1762 bp proximal