rs48885114 SNP Detail

Summary

• ID
  rs48885114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC AATAGAGGGG CTGAGGTACC
  R
  ACCTGGAGAG CAAGACGAGG GCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147736154	ENSMUSSNP867783	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48885114					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1520 bp proximal
Gm70191	predicted gene, 70191	30 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	mRNA-UTR
Rr603759	regulatory region 603759	509 bp proximal
Rr603760	regulatory region 603760	987 bp proximal
Rr603761	regulatory region 603761	1978 bp proximal
Tssr40062	transcription start site region 40062	1793 bp downstream
Tssr40063	transcription start site region 40063	307 bp downstream
Tssr40064	transcription start site region 40064	246 bp downstream
Tssr40065	transcription start site region 40065	219 bp downstream
Tssr40066	transcription start site region 40066	115 bp downstream
Tssr40067	transcription start site region 40067	61 bp downstream
Tssr40068	transcription start site region 40068	6 bp downstream
Tssr40069	transcription start site region 40069	116 bp upstream
Tssr40070	transcription start site region 40070	201 bp upstream
Tssr40071	transcription start site region 40071	225 bp upstream
Tssr40072	transcription start site region 40072	270 bp upstream
Tssr40073	transcription start site region 40073	293 bp upstream
Tssr40074	transcription start site region 40074	318 bp upstream
Tssr40075	transcription start site region 40075	331 bp upstream
Tssr40076	transcription start site region 40076	358 bp upstream
Tssr40077	transcription start site region 40077	377 bp upstream
Tssr44314	transcription start site region 44314	1677 bp upstream
Tssr44315	transcription start site region 44315	242 bp upstream
Tssr44316	transcription start site region 44316	144 bp upstream
Tssr44317	transcription start site region 44317	116 bp upstream
Tssr44318	transcription start site region 44318	242 bp downstream
Tssr44319	transcription start site region 44319	1252 bp downstream