rs48885345 SNP Detail

Summary

• ID
  rs48885345
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGGGAC TCTGGCCCTT
  GTTGAGCATG GCTCTGGCAG GCCTTGCCCT TCCCTCCCAT TTCCTCTACC TTTCTAAAAA
  CCTTTGATTA ACATGCCTAA AGCTAGCCAC CAAGGTCTAT TCCCTTATTT GGTCACTTCC
  TCCTGAGGCT GACTACCAAG GTCCAGCTAT CTAAATATCG AAGTTTAAAC TTAAACACCT
  C
  ATCCTAACTT GGGGTTTTCC CTTGTACCTT TATAAACCGC CATTTTCCTA TGTGCCAAGC
  CTATCTTCTC TCTATCCAGA GGCAGTCTTT TGTCCTCCAG GACAAATACT TCTCCTCTCC
  TCTGTTCCCT TCTCCTTCCC CTTCATCCTC TATCTCCCGT ATTTGTTCTT TATTCCGTGG
  CCCCTGGCTC TCTGGGGCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137728913	ENSMUSSNP4571863	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48885345					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028837 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	620 bp downstream
Rr387210	regulatory region 387210	1694 bp downstream
Rr387211	regulatory region 387211	1239 bp upstream