rs48886054 SNP Detail

Summary

• ID
  rs48886054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCCTCA ATCTCCAAAG
  CCCACTGGCT GCAAAGGAAA CTATTCACTC ATGCATAGTA AATAACATAC CTTTTAGTTT
  TGTTTCTGGT CCATTAAATC ATGGGCCAGA GAATGGGTTT GTCACTTCTA AAATTTGGAC
  CCAAGCAAGC ATATGTGTTT ATTCATGATG TTAAATCATT TTACCGCACG CTGTGTTCAG
  Y
  TGCAGAGTAA ACGCTGCTTA AAGCTGTAAT ACTGGTAAGA GCCGCTGATG CTGTGACAGG
  CAGAGGTTGG CTGGAGACCT GGTTCTTAAA TACTTGTATA ATTAAGATAT CTGAGCCATC
  ACTGATCACT GCCCACAACT TAAACTTCCA AGCTTCACAC TTGGAACATG TGTGTACATA
  CGCTGACTCT GTCCCTGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137760077	ENSMUSSNP7061567	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48886054					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859894 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	107 bp proximal
Rr267638	regulatory region 267638	295 bp distal