rs48886478 SNP Detail

Summary

• ID
  rs48886478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:9229681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGTACT GGGTACTAGG
  TACTGGGTAC TGGGTACTAG GTACTGGGTA CTGGGTACTG GGGATTGAAC CCAATTCATG
  AGTCAGAGCC TCTTCCTCCA GTATTCTAGT CATGGGGGCA AGGTGGGGGC TCCATTCACA
  GGACCCATAG TTGATAGCAA GAGGAGCGTC ACACCAGCAA CAGAAGCTCA GAGATCTCCA
  R
  TGGCCTCCTA AGAGTCTAGG CAAAACTAAC ATCTTCAGGT GTGCAGTGGC GTTTCCTTCC
  TCCCTTCCTT CCAGCCTCCT CTGTGACACC AAGGGATGGG AGATATGGAG CTTTGCCTAG
  GCAGGTTTTT GCTCTCTCTT CTCTGAGTTT GACAGGTTCT CTTCTAATTA CCTGTTCTTC
  ACATGCCCAG CCAATCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	PWD/PhJ
ss60528499	NES16547961	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	PWD/PhJ
rs48886478					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60528499	NES16547961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:9229681 () rs orientation: forward

Symbol	Name	Function Class
Rr521842	regulatory region 521842	963 bp distal