rs48887123 SNP Detail

Summary

• ID
  rs48887123
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140543758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA ATACCTTGGG ATGCCCAGCC
  T
  CGGGAGGCTC AGGGGGAAAA CTCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147713938	ENSMUSSNP4363350	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48887123					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140543758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	1514 bp distal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603557	regulatory region 603557	within coordinates
Rr603558	regulatory region 603558	1128 bp proximal