rs48887166 SNP Detail

Summary

• ID
  rs48887166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACTGTTTG AAGTACAAAA TCATATTATC CAATAATAGT
  AATTAGGGAA GCGTGAGACA TGGGGTTGGA GAAGTGGCTT AGAGGTTAAG AAAACCTGCT
  R
  TCCACGCCGA GGACCTGGGT TTGGGCTCCA GCACCAGCAT GGTGACTCAC ACCATCCGTT
  AGTGCAGATC CAGGGTATCC AATGGCTTAT TCTCACCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148092365	ENSMUSSNP3902122	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320584284	CHEV_2_156943438	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48887166					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959622 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	418 bp distal
Rr568437	regulatory region 568437	554 bp distal
Rr568438	regulatory region 568438	153 bp distal
Rr568439	regulatory region 568439	1329 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27144	transcription start site region 27144	1890 bp downstream