rs48887170 SNP Detail

Summary

• ID
  rs48887170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130488084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG AGCTTAAAGC ACGGCTACCC
  Y
  GTCTCCTCGT CCACACTGGT CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135897830	ENSMUSSNP2843462	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320966024	CHEV_3_130397353	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48887170					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130488084 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	1720 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	1482 bp downstream
Rr398016	regulatory region 398016	96 bp downstream
Rr585194	regulatory region 585194	82 bp distal
Rr585195	regulatory region 585195	201 bp distal
Rr585196	regulatory region 585196	306 bp proximal