rs48887923 SNP Detail

Summary

• ID
  rs48887923
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108887284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT GGTTGTTCCA GTGGTAGCCG
  K
  AGTGCCGTAC ATGGGCTTGA CGGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61451639	NES16833313	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48887923					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451639	NES16833313	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108887284 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	1531 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	1403 bp upstream
Rr686956	regulatory region 686956	351 bp distal
Rr686957	regulatory region 686957	1025 bp proximal
Rr686958	regulatory region 686958	1446 bp proximal
Rr686959	regulatory region 686959	1592 bp proximal
Shisa5	shisa family member 5	439 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr87215	transcription start site region 87215	1922 bp downstream
Tssr87216	transcription start site region 87216	1869 bp downstream
Tssr87217	transcription start site region 87217	1796 bp downstream
Tssr87218	transcription start site region 87218	1496 bp downstream
Tssr87219	transcription start site region 87219	1263 bp downstream
Tssr87220	transcription start site region 87220	1175 bp downstream
Tssr87221	transcription start site region 87221	956 bp downstream
Tssr87222	transcription start site region 87222	907 bp downstream
Tssr91571	transcription start site region 91571	493 bp upstream
Tssr91572	transcription start site region 91572	20 bp downstream
Tssr91573	transcription start site region 91573	177 bp downstream
Tssr91574	transcription start site region 91574	407 bp downstream
Tssr91575	transcription start site region 91575	458 bp downstream
Tssr91576	transcription start site region 91576	543 bp downstream
Tssr91577	transcription start site region 91577	1000 bp downstream
Tssr91578	transcription start site region 91578	1460 bp downstream
Tssr91579	transcription start site region 91579	1495 bp downstream