rs48889000 SNP Detail

Summary

• ID
  rs48889000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80038814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGCCAG TCCAGCATTG
  TGTCACAGCC AGAGACTCCC TCAGCAGGTG CCAGGACTGG CTAAGTTAAC AGTCCTTCCC
  TCCCAGTCTG AACATCCAGT GCTTAAAAGC TTTGTCCCTA ATTTGCAGGG TTCAGTTTGC
  TTTATTGGGT AGGAGGTCTG TACAGAGCAC TTCAGAAAGG ATGCATACAG CCATCCATCT
  Y
  AGGCGAGACC TCTCTCACCC AGAGGCTGCT AGGCCCATAT GTGTCCAGCC CCGAGGTATC
  TTTGCACACT CACACGCACT CTGTGCTCAT GTGTGTCGTG GGAGTTGAGG TGTGCCTACA
  AACTCCTTGG GCACTGCCCT CTCTCCTCTC TGAGCCACTC TACCAACATT GGACTGTCAC
  GGCAGCTTCT TTAACAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569768	NES17023029	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	T		C	C	T	C
ss148214198	ENSMUSSNP2027816	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48889000					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569768	NES17023029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80038814 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	1214 bp distal
Rr308003	regulatory region 308003	1987 bp proximal
Rr310675	regulatory region 310675	1604 bp proximal
Rr314587	regulatory region 314587	414 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates