rs48889568 SNP Detail

Summary

• ID
  rs48889568
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94351463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGCATGT TTGCGCACCG
  CACGCATGCG TGGAGCTCCC AAAGGCCAGA GGAGCGCATC GGAACCCCTA GAGCTGGAGT
  TGTGGATGGC TGTGAGCTGC TATGTGGCTG CTGGGAATCG AATCTGGGTC CACTACCCTA
  GCAGTGAGGG CTCTTAAGCG TAGAGTCACC TCTCCAGCCA CAGTCTGTCC CGTTGTAGCT
  S
  AGGGAGTGAA CACAGGCCCT GATATATTCT AAGTGGCTGT ACTATCACTG AGCTGCACAG
  GTCTTGTCCA TGAATATATT TCTTACATTT TTCTTGATGT AAGTTTTATT TTTGTTAAAG
  TTCAATTATA CACAATAAGG TATACATGCT TTCAGAGCAA AACAATAGAT TTATGTACAA
  AAATGTCTAA TATTTATCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	PWD/PhJ
ss60514797	NES16523702	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	PWD/PhJ
rs48889568					SNP	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514797	NES16523702	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94351463 () rs orientation: forward

Symbol	Name	Function Class
Gm56630	predicted gene, 56630	1610 bp upstream
Rr392165	regulatory region 392165	589 bp upstream
Tssr139557	transcription start site region 139557	1606 bp upstream