rs48891312 SNP Detail

Summary

• ID
  rs48891312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61872443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTTGATGC TTCTTTGAAA ATCTTTGCTT GATTTTGGCT
  GTAAATCACC TACCCTGTTA AATGCTGTTT AATCCCAAAG ATGTAAGTTG AGGTGAGGTT
  Y
  CTTCTGTGTC TACCCCATTG CACTCAACTG AATAGAAATA TTTGGATTTA GAACATCTCA
  AAAGTGGGTA GAATGTCCTT TGGAATTTTG TTGCTCCATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss61822508	NES17742149	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs48891312					SNP	T	C	C	T	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61822508	NES17742149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61872443 () rs orientation: forward

Symbol	Name	Function Class
1700028E11Rik	RIKEN cDNA 1700028E11 gene	within coordinates
Gm9595	predicted gene 9595	within coordinates
Gm49357	predicted gene, 49357	within coordinates
Gm49400	predicted gene 49400	298 bp downstream