rs48891516 SNP Detail

Summary

• ID
  rs48891516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTGGATT TTGGTTGTTA
  TTACATTCAC TCTTGTTCTT CTTCATGCAT GTAAGCCATG TCCCTTGTAT TTCCTTGCAC
  TTAGTCCAGA GGACTTATTT CTGGCATCTC ACAAATCCAA GGCATACTGT AGAAACAGGG
  TATATCATTC CAGTTCTTCC TGGAGTTTGA AGAGTCCCTT ATGGTGGCAC AGTCCTCCAC
  Y
  AAAACTATAT TGTTGGGCTC CCCAGCATCC CAGAAGCTGT GAAGGAAAAA CACAGGAGAT
  CTTAAATATC AGAAATAGCA GCCTTAACAT AGCAAACAAC TTACATATTT GTTATTTAAC
  TATCATTTTG GGAGATGGAA ATTATAATCT CCATTTTATC AATGAGAAAA CCCATTTGCC
  TACATCATCA GATGGTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936897	NES16189359	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48891516					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936897	NES16189359	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260619 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	880 bp downstream
Tssr58809	transcription start site region 58809	243 bp downstream
Tssr58810	transcription start site region 58810	218 bp downstream
Tssr58811	transcription start site region 58811	129 bp downstream
Tssr63020	transcription start site region 63020	1156 bp upstream
Tssr63021	transcription start site region 63021	1078 bp upstream
Tssr63022	transcription start site region 63022	1039 bp upstream
Tssr63023	transcription start site region 63023	984 bp upstream
Tssr63024	transcription start site region 63024	886 bp upstream
Tssr63025	transcription start site region 63025	854 bp upstream
Tssr63026	transcription start site region 63026	833 bp upstream
Tssr63027	transcription start site region 63027	795 bp upstream
Tssr63028	transcription start site region 63028	770 bp upstream
Tssr63029	transcription start site region 63029	742 bp upstream
Tssr63030	transcription start site region 63030	686 bp upstream
Tssr63031	transcription start site region 63031	656 bp upstream
Tssr63032	transcription start site region 63032	625 bp upstream
Tssr63033	transcription start site region 63033	611 bp upstream
Tssr63034	transcription start site region 63034	585 bp upstream
Tssr63035	transcription start site region 63035	570 bp upstream
Tssr63036	transcription start site region 63036	503 bp upstream
Tssr63037	transcription start site region 63037	470 bp upstream
Tssr63038	transcription start site region 63038	445 bp upstream
Tssr63039	transcription start site region 63039	377 bp upstream
Tssr63040	transcription start site region 63040	333 bp upstream
Tssr63041	transcription start site region 63041	286 bp upstream
Tssr63042	transcription start site region 63042	266 bp upstream
Tssr63043	transcription start site region 63043	249 bp upstream
Tssr63044	transcription start site region 63044	214 bp upstream
Tssr63045	transcription start site region 63045	134 bp upstream
Tssr63046	transcription start site region 63046	121 bp upstream
Tssr63047	transcription start site region 63047	100 bp upstream
Tssr63048	transcription start site region 63048	66 bp upstream
Tssr63049	transcription start site region 63049	42 bp upstream
Tssr63050	transcription start site region 63050	within coordinates
Tssr63051	transcription start site region 63051	14 bp downstream
Tssr63052	transcription start site region 63052	1527 bp downstream
Tssr63053	transcription start site region 63053	1637 bp downstream
Tssr63054	transcription start site region 63054	1804 bp downstream
Tssr63055	transcription start site region 63055	1831 bp downstream
Tssr63056	transcription start site region 63056	1872 bp downstream
Tssr63057	transcription start site region 63057	1905 bp downstream