rs48891560 SNP Detail

Summary

• ID
  rs48891560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62723636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGAGTA AAGGTATCTC
  GAAAACGAAT GTTTCCAGAA GCGAGTCGGG TCATCCAGGT GACATCCTAG AGGTGTCAAA
  CCAACTTCAA GACCAAAGAG AAATCAAATT AGCTTTGATT TTTTCCCTAC ATCTTTATTT
  TGATTAGCCA TTGACTGCGG ACTCATTAGT GATCATAATC ACTTTATAGG AAATGGAAAT
  R
  CAGTAAGAGA GAAATTCCTG CCATGAGGTT CAGGCTTGAC TTTAACTAGG CATATCCCAA
  GGTAAGATAG CTTTCTCTTC TTCCAGAAGT CTGCCCTTAG ACAAGGAAAT CTACTGCTTC
  AGGTGGAAGG GAGAAAACTG GCTTGTGGCT TTACACTCCA CTCCCCCAAT TCCATACCTG
  AACTGTGGTA TATAAATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52348682	NES15281831	PERLEGEN	MM_PANEL2	f	SNP		G	G		A
ss323332086	CHEV_10_62350605	CHEVERUD	SCREENING_POP	f	SNP	G			A
SNP Consensus Information
SNP					Consensus Type	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs48891560					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348682	NES15281831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62723636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	299 bp distal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	394 bp upstream
Tssr97890	transcription start site region 97890	417 bp upstream
Tssr97891	transcription start site region 97891	384 bp upstream