rs48891682 SNP Detail

Summary

• ID
  rs48891682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58892425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC GCCCTAGTCG GGGCCCTTCA
  R
  GGATGCAAGC CCAGAAGGAT GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132221299	ENSMUSSNP4577249	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323695596	CHEV_11_58815101	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48891682					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58892425 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	1311 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	1321 bp upstream
Tssr101783	transcription start site region 101783	1358 bp upstream
Tssr101784	transcription start site region 101784	1375 bp upstream
Tssr108189	transcription start site region 108189	583 bp downstream
Tssr108190	transcription start site region 108190	599 bp downstream
Tssr108191	transcription start site region 108191	756 bp downstream
Tssr108192	transcription start site region 108192	775 bp downstream
Tssr108193	transcription start site region 108193	792 bp downstream
Tssr108194	transcription start site region 108194	822 bp downstream