rs48891961 SNP Detail

Summary

• ID
  rs48891961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60723994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAGCTC AGGCATGGGG
  AAGCTCCCCA TGGTCATGCA TCCGTCCCTC ACTTCCTGGA AGATGTGTTC CCTCTCCCTC
  ACCCCACCCA TCCTTATAGG GTTGTAACTG TGACATGACC TTACATTTGG GGCTCAGGGC
  CCCAAGTTCT GACTCTTTCA TGAGTTAATA ATTTGGTCTT AGGCATCCTG CTCTCTCACT
  Y
  TGGTCTGTTT CCCTATTCTG TGTCTGCCAG GAAGTGAGAC CTTGTCTATA GAAGAGGTGA
  GCGCCCTTGA ACGTGTTTCC TATATGTACA CTGGGCTGAC CCAGGTCTAG GCAGCAAAAA
  TCTGATATCC AAAGCTATGT GACCTGCAGG GGCTGTTGAT GGAAGGGGGA AGGGTTCTCT
  CTTGTCCCAC CTGAATGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61278405	NES16780528	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48891961					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61278405	NES16780528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60723994 () rs orientation: forward

Symbol	Name	Function Class
Gm36750	predicted gene, 36750	392 bp upstream
Gm66331	predicted gene, 66331	104 bp upstream
Rr432238	regulatory region 432238	1760 bp distal
Rr432239	regulatory region 432239	359 bp proximal
Rr432240	regulatory region 432240	468 bp proximal
Rr432241	regulatory region 432241	1665 bp proximal