rs48892429 SNP Detail

Summary

• ID
  rs48892429
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5350684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGCCAA GGCTGAGGCC
  TGGCTGTCTC TGTTAGGTAG TGTGACCACT GCTGATTCGT GTTTGCTATC CTGACTCTAC
  CGACAGGACT GCTGGTGTGT CCATAGAGTG TTTGTGAGTG GATTGAGCTG CTGCAGCCAA
  CCTGTAAACA ACACAGACAA GAGTTATTCC AAAAAGCTTT GTAAACAGGG CTACTTCCCC
  A
  TATCCTTTCT TTTTTACTAC CTCTGGTAGG TGGTGAGCTA CAAGGGAGAT TAAAACAATT
  AAAAACCATC ATTAAAAATT GGCATTAAGG GGCTGGTGAG ATGGCTCAGT GGGTAAGAGC
  ACCCGACTGC TCTTCCGAAG GTCCAGAGTT CAAATCCCAG CAACCACATG GTGGCTCACA
  ACCATCCGTA ACAAGATCTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325518190	CHEV_18_5350682	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48892429					SNP	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss146578002	ENSMUSSNP4796190	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5350684 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	within coordinates
Gm52372	predicted gene, 52372	1535 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr533383	regulatory region 533383	1573 bp distal