rs48892627 SNP Detail

Summary

• ID
  rs48892627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89922958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGGAGG AAGAATGTAG
  ATTTGCCTCA CTCTCCACAC TTGTATGCTT CAAAGGGAAA CAGTAGAAGA TAAAGAAAAC
  AACGATTAGC AACAGGTTAG AGAAGATAAG CAATGTATGA CCTCATCAAA TCTGAAATTT
  AAAAAAGCCA ACCCAGGGTA TCAGGATTTC TAGCTACATG TTCCTCGCAA TTGCCCATTG
  R
  CCATCATCAT CGTTTTTTTG TTCAGAGAAC AGCAAAGTGG CTGGGGACAA ATTCCATAGG
  GACCAATGAC ATCGATTAGT GAGGGGGAAA AGCACAGAAC TAAAAAGTGT ATCACAGCCT
  TCTTTTCTAC ACCTTGCTTC ACTAGTTCAA CTTACAAAAC TAAAATATAA GCTGGAAGAA
  AGTACCAGCT TTGACTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423024	NES15924718	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48892627					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423024	NES15924718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89922958 () rs orientation: forward

Symbol	Name	Function Class
Tssr34181	transcription start site region 34181	1219 bp upstream
Tssr34182	transcription start site region 34182	1168 bp downstream
Tssr34183	transcription start site region 34183	1958 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates