rs48895952 SNP Detail

Summary

• ID
  rs48895952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:139534380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA TCTTTTTCCT AGAAGATATA GAAAAGAATA
  GATTAGGCTA GATTAGGAGC TGACACAAAC CAAATAGATA ATTTCACTAG CTTAACTAAA
  AATGAGTACT GATGGACTGA TGAGGGGTTA CTTACAGCAA CATAGATGAC GTGAAATCAA
  Y
  AGCAGCAGTA ATCATCCCAC AAAATACAGC TAATTCCTCA GGAATCCTGC TTCCAGGAGC
  TCTCTCCGTG ACTCATAGGC AGTTGAGCTG TCTAGAGCCT TTCAGGTAAC TCACACACTG
  GGACAGTGTC CTCTCCCAAA TCCATTACTG TTTAGATAGC TTTGAGACAG ATAACTATGA
  ATTTTCTGAG TTTCAGGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133918666	ENSMUSSNP4858402	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48895952					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:139534380 () rs orientation: forward

Symbol	Name	Function Class
4930404I20Rik	RIKEN cDNA 4930404I20 gene	within coordinates
Gm67453	predicted gene, 67453	334 bp upstream