rs48896402 SNP Detail

Summary

• ID
  rs48896402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96723004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCATGC TATGGAATCT
  TCCTCCACTG AGACTCATAG AAAAAGAGAC TCACTCTGCC TCCCCGGCCT GAGCTTCCAT
  TAGAGGCCTG CCAGGCTCTC TGTCTATCCG TGATGCTGAG GACTAAACTC TCCTCACACC
  CCAGACTATG CTGGTCTTTG CCTGTTTGTA TGTCCAAGGC ATTAAAAACT CACCGAATCA
  R
  CTTCTTAACC AAAAGGACAG TCTGCCTCAC TGTGCCCCGT GACACATACA CGCGGCCCTG
  CTCAGCCATC GCAGCTTCAA AGCTTTGGGT GGACAAAGCA GTTGCTGCTC TTCTGTTTGC
  AGCAGCTCCT ACTGTACTGG GTCTGCCAGA AATGAGACGC TGTTTCTTCA GTTGACTATC
  AGACCATTGA GAGAATGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60426442	NES15934964	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48896402					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60426442	NES15934964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96723004 () rs orientation: forward

Symbol	Name	Function Class
Cd160	CD160 antigen	Intron
Rr581395	regulatory region 581395	1509 bp distal
Rr581398	regulatory region 581398	985 bp distal
Tssr34643	transcription start site region 34643	1156 bp upstream