rs48897209 SNP Detail

Summary

• ID
  rs48897209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97240271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGGCAGAG CAGACATTTT CCTGAGGGAA ATGGACCACC
  CTGTGCTTAA ACAGCAGTGG GAAGATATTT TCAGAATACA TTCATAAGTC AGTGCCCAAA
  R
  TCCACGTTAG CCTCCTGTGG GCTCTGAGTG GCGGGAGCCG CCCGAGTGCC TCCCCAGGGC
  TGACAGAGGG GATGCAGGTT CGCAGCCAGC CGGAGGGAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63608765	NES17040643	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48897209					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608765	NES17040643	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97240271 () rs orientation: forward

Symbol	Name	Function Class
Gm33325	predicted gene, 33325	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr404591	regulatory region 404591	13 bp upstream
Rr508793	regulatory region 508793	within coordinates
Rr508794	regulatory region 508794	661 bp proximal