rs48898018 SNP Detail

Summary

• ID
  rs48898018
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53251895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ACCGGTGAGT TTAACTCAGG TCATGTGACG CTTTCCCAGG
  TTATCTAGTA CAGAGGCAAA TAGCCCGTTT GGTGTGCAGA ATGTTCGATG TTTGTTCTTA
  A
  AATTGAAGTC TGGGTAGTCG CGAGGAAGCA AACGGTATCT CACTCACTTC AGGACATCTC
  TTTGAGACTG AAACTTGGCT TACCTGAAAG CCAGCTATTT A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136501317	ENSMUSSNP5277068	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48898018					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53251895 () rs orientation: forward

Symbol	Name	Function Class
Exph5	exophilin 5	within coordinates
Rr679004	regulatory region 679004	within coordinates
Tssr85124	transcription start site region 85124	36 bp upstream
Tssr85125	transcription start site region 85125	465 bp upstream
Tssr85126	transcription start site region 85126	487 bp upstream
Tssr85127	transcription start site region 85127	614 bp upstream
Tssr85128	transcription start site region 85128	632 bp upstream
Tssr85129	transcription start site region 85129	659 bp upstream
Tssr85130	transcription start site region 85130	746 bp upstream
Tssr85131	transcription start site region 85131	1211 bp upstream