rs48898396 SNP Detail

Summary

• ID
  rs48898396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32628208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATGGTGCA AAGGTTGAGA TGGATAGCTA ATAGGGTAGA
  TTTAAAAAAG ATTTTTACAT GGGGAATTAC GGTTCAAAAC AGTGGCATTT GCTATAGATA
  R
  ATCAATAAAG GCCAAGGCTA TAGGTGTGGG ACTGGCTATG TGAGTTTGTC TAGAGGAGGG
  CTGGTAGTGT CTTTTGTCTT TTGCTTAGTA GTTGCTATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136250150	ENSMUSSNP4698142	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48898396					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32628208 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	353 bp upstream
Rr676235	regulatory region 676235	1338 bp distal
Rr676236	regulatory region 676236	380 bp distal
Rr676237	regulatory region 676237	424 bp proximal
Tssr84287	transcription start site region 84287	151 bp downstream
Tssr88694	transcription start site region 88694	1196 bp downstream