rs48899267 SNP Detail

Summary

• ID
  rs48899267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3896963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAATCCT TGGGTTTTGC
  TAGCCAACCA ATCTGATTCT GATGTCCCAT GTTCAGTAAA AGGCCATGTT TCAATATAAG
  GTGGAGAGAG CACCTGAACA CCTCACAATT CCTACCCCTA ACCCCCAGCC AGTTCTGCTC
  CTGCTGGGCC CACATCCTCC ACAACCAGCC CCACCCCTGC TCCCTAGTGT CTTTTTCCAT
  R
  GTCACCCTTA GATCCTCACA GTTCTAGCTT CTGCCCCCAG GTTCTGTATT ACCTCCTCTA
  ATCTGCCTGA GTCCCAGTCA TCACACAGAA TAGCTTCTCT TGATACTAAT CCTCGAGGTT
  TCATTCTTTT AATTCTCCAT TCTGGAATCA TCTCTTCAGT CAGAAATGAC ATACTCAGCC
  GGGCGTGGTG GTGCAACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52585006	NES15684294	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48899267					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52585006	NES15684294	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3896963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7905	CpG island 7905	1001 bp distal
Rr370033	regulatory region 370033	1187 bp downstream
Rr510763	regulatory region 510763	782 bp distal
Rr510764	regulatory region 510764	1027 bp distal
Rr510765	regulatory region 510765	557 bp proximal
Trap1	TNF receptor-associated protein 1	1272 bp upstream
Tssr139752	transcription start site region 139752	1268 bp upstream